Computer Analyst II- Nogales Lab

Primary Work Address: 2033 Valley Life Sciences Building, Berkeley, CA, 94720-3140

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We are seeking a Computer Analyst II to join the lab of Dr. Eva Nogales at the University of California, Berkeley. Eva Nogales studies the molecular function of macromolecular assemblies by direct visualization of their architecture, functional states, and regulatory interactions. Nogales and her team focus their efforts on two areas of eukaryotic biology in particular: regulatory mechanisms underlying gene expression and cytoskeleton self-assembly during cell division. To gain a molecular understanding of their systems of interest, the team uses cutting-edge cryo-electron microscopy methods and image analysis as well as biochemical and biophysical assays. To learn more about the lab, visit their website: https://cryoem.berkeley.edu/

About the role:

You will be responsible for the operation and maintenance of computer hardware and software related to the lab infrastructure. You will primarily be responsible for IT support and maintenance and administration of current infrastructure. You will review goals and develop systems to meet those goals. May develop innovative techniques. You are mainly accountable for the smooth operation of bioinformatics software on a variety of Linux based systems, as well as enabling lab members to use external computational facilities to solve large scale processing problems. The Nogales Lab has a medium-sized computer cluster consisting of both GPU and CPU compute nodes, including multiple Nvidia H100 servers, as well as 2.5 Petabytes of storage. You will oversee management of the cluster as well as direct IT support for the researchers utilizing said cluster. You will work in the exciting field of Cryo-Electron Microscopy. Meet smart, fun, international people. You will have a private office with flexible hours and the possibility of working remotely if needed.

What we provide:

• Exciting scientific projects with medical implications.

• Weekly meetings with the Investigator and lab members in a collaborative and highly team-oriented setting.

• A fun, positive, diverse, and inclusive research environment.

• A team that believes in continuous learning and cultivates an environment of collaboration.

• A competitive compensation package, with comprehensive health and welfare benefits.

What you’ll do:

• Engineering of System Administration related solutions for various project and operational needs.

• Install, repair, and maintain existing servers. Configuring hardware, peripherals, services, storage, etc. in accordance with standards and project/operational requirements.

• Research and recommend innovative, and where possible automated approaches for data management and backup.

• Work on projects with undefined time frames and unclear outcomes.

• Perform daily system monitoring, verifying the integrity and availability of all hardware, server resources, systems, and key processes, reviewing system and application logs, and verifying completion of scheduled jobs such as backups.

• Support lab members in running bioinformatics software packages.

• Perform regular file archival and purge as necessary.

• Maintain the lab web presence at http://cryoem.berkeley.edu

• Maintain documentation.

What you bring:

• Bachelor’s degree with some experience in IT support or System Administration.

• Technical proficiency, scientific creativity, collaborative ability as well as independent thought.

• Network hardware and technologies including but not limited to: RoCE, FibreChannel, Infiniband, VLAN configuration, AOC vs DAC cabling.

• Shell scripting, Python, Java-script, MySQL, OpenMPI, C++. Fortran is a plus.

• Experience managing and configuring parallel filesystems.

• Experience managing and configuring SLURM or other job scheduling system.

• Ability to explain technical aspects to non-technical people.

• Ability to work independently, self-starter. And willingness to learn.

• Shell scripting experience: bash, csh, powershell, etc.

Physical Requirements

Remaining in a normal seated or standing position for extended periods of time; reaching and grasping by extending hand(s) or arm(s); dexterity to manipulate objects with fingers, for example using a keyboard; communication skills using the spoken word; ability to see and hear within normal parameters; ability to move about workspace. The position requires mobility, including the ability to move materials weighing up to several pounds (such as a laptop computer or tablet).

Persons with disabilities may be able to perform the essential duties of this position with reasonable accommodation. Requests for reasonable accommodation will be evaluated on an individual basis.

Please Note:

This job description sets forth the job’s principal duties, responsibilities, and requirements; it should not be construed as an exhaustive statement, however.  Unless they begin with the word “may,” the Essential Duties and Responsibilities described above are “essential functions” of the job, as defined by the Americans with Disabilities Act.

Compensation and Benefits

Our employees are compensated from a total rewards perspective in many ways for their contributions to our mission, including competitive pay, exceptional health benefits, retirement plans, time off, and a range of recognition and wellness programs. Visit our Benefits at HHMI site to learn more. 

Compensation Range

$79,560.00 (minimum) - $99,400.00 (midpoint) - $129,240.00 (maximum)

Pay Type:

Annual

HHMI’s salary structure is developed based on relevant job market data. HHMI considers a candidate's education, previous experiences, knowledge, skills and abilities, as well as internal equity when making job offers. Typically, a new hire for this position in this location is compensated between the minimum and the midpoint of the salary range.

HHMI is an Equal Opportunity Employer