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organoid systems with functional assays, flow cytometry, advanced imaging, and high-dimensional approaches, including single-cell and spatial transcriptomics and epigenomics. More details: https
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by spectral flow cytometry and scRNAseq, while CD4+ T cell / B cell interactions will be probed by confocal microscopy. The project will then aim at devising a new generation LO chip model that better
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, recognition and responses to peptidoglycan in the mammalian host. FEMS Microbiol Rev . 45(1):fuaa044. https://doi.org/10.1093/femsre/fuaa044 Wheeler R, PA Dias Bastos, O Disson, A Rifflet,I Galbanyi
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and evaluate restoration of immunity leading to functional cures. The project will investigate virological and immunological parameters using molecular biology, conventional and spectral flow
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cells, immune cells and the vasculature. We perform mostly in vivo studies, combining lineage tracing and depletion models, flow cytometry, confocal microscopy and unbiased approaches such as single
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here: https://www.pasteur.fr/…/training…/doctoral-programs/ppu The call for enrollment of students in October 2027 will be open from October 1st to November 16th, 2026. You might be interested in
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Statistical physics and data analysis Microscope design and control Genomic and genetic tool design Candidates should have a proven successful track record equipped with a combination of these skills. They
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Highlighted publication: “In vivo commensal control of Clostridioides difficile virulence” Girinathan et al., Cell Host ; Microbes, Pathenogenesis of Bacterial Anaerobes team News Test 3 ML News Published on: 30 Mar 2023 • Modified on: 09 Sep 2026
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) Familiarity with version control (Git / GitHub) Proficient written and spoken English (B2 level or higher) Ability to communicate methodological assumptions and limitations clearly and succinctly
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for Integrative Genomics The Machine Learning for Integrative Genomics team (https://research.pasteur.fr/en/team/machine-learning-for-integrative- genomics/) at Institut Pasteur, headed by Laura