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Field
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, and host–pathogen ecological interactions using high-throughput sequencing and Nanopore-based diagnostic technologies. Research activities will include virus detection, indexing, characterization, and
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during field-sampling campaigns. Lead hybrid (Oxford Nanopore + Illumina) sequencing, assembly, and annotation of pathogen genomes; conduct comparative and population genomics to characterize spatial
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leukemia using primary human samples, cell lines, and mouse models. Responsibilities will be to design, perform, and analyze data from genomic assays including long read sequencing using the Oxford Nanopore
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proteomics under the supervision of Professor Dirk Aarts. The project involves developing novel platforms for protein detection, manipulation, and analysis, integrating microfluidics with nanopore sensing
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Analysis - Analyze DNA repair outcomes using PCR, sequencing, genotyping, HRMA, Sanger-based editing analysis, nanopore sequencing, and related molecular approaches. -Evaluate homing, end-joining, SSA, indel
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analysing high-throughput sequencing datasets is essential, together with expertise in long-read transcriptomics (Oxford Nanopore and/or PacBio), transcript annotation, and isoform calling. You will have
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also engage actively with external collaborators. The Person A PhD in a relevant discipline (e.g., microbiology, genomics, bioinformatics) Proven experience in Oxford Nanopore Technologies (ONT
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, poly(A) stie mapping, long-read PacBio or Oxford Nanopore sequencing) or targeted mass spectrometry. Experience with animal models, including tumor xenografts or patient-derived xenografts (PDX). Strong
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nanoporous media; Atomistic simulation of chemical reactions and/or thin-film growth; Data-driven cheminformatics for molecular modeling and/or design; Molecular dynamics simulations. Your background and
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Nanopore, with a strong emphasis on single-molecule chromatin fiber profiling (e.g. Fiber-seq). Applies and/or develops epigenomic and transcriptomic assays such as CUT&RUN and RNA-seq (including specialized