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these communities influence pathogen persistence, sanitizer tolerance, and antimicrobial resistance. The work integrates shotgun metagenomics, metatranscriptomics, genome-scale metabolic modeling, and culture-based
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analysis Microbiology knowledge and technical skills in microbiome analysis, including metagenomics and metatranscriptomics Proven commitment to proactively keeping up to date with discipline knowledge and
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sequencing, metagenomics, metatranscriptomics, proteomics, 16S sequencing, transcriptomics and epigenetics. Experience in integrated multi-omic analysis and patient-based data, including dealing with missing
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Veterinärmedizinische Universität Wien (University of Veterinary Medicine Vienna) | Austria | 2 months ago
, metatranscriptomics); Good knowledge of statistics; Basic knowledge in applying AI-based models (e.g., machine learning, predictive modeling) for the analysis of biological data; Very good command of English (spoken
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, but its human burden is badly understood. This PhD addresses this gap, integrating multiple high‑value datasets describing metagenomic and metatranscriptomic sequencing information, clinical and
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or R for processing high-throughput sequencing data (amplicon, metagenomics, metatranscriptomics) and data visualization. Research Interests: Strong academic interest in Astroecology, Microbial Synthetic
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Strategy Assist with experimental design for microbial WGS, RNA-seq, transcriptomic, metagenomic, metatranscriptomic, bacteriophage, and host–pathogen interaction studies. Help determine appropriate
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, particularly computational approaches for metagenomic and metatranscriptomic profiling, multi-omic integration (e.g. with metabolomics or genetics), and their application in population studies. * Familiarity
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Qualifications: Experience analyzing oral microbiome datasets (16S, shotgun metagenomics, or metatranscriptomics). Advanced programming and data science skills in R, Python, or other relevant languages
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sequencing data analysis (shotgun metagenomic, and/or metatranscriptomic), microbial metabolomics, or microbial genetics. Experience designing and conducting experiments that probe the relationship between