Research Software Engineer (m/f) BIOPOLIS2024-20 EU

3 Apr 2024
Job Information

Organisation/Company

ASSOCIAÇÃO BIOPOLIS

Research Field

Computer science

Researcher Profile

First Stage Researcher (R1)

Country

Portugal

Application Deadline

14 Apr 2024 - 23:59 (Europe/Lisbon)

Type of Contract

Temporary

Job Status

Full-time

Hours Per Week

35

Offer Starting Date

1 May 2024

Is the job funded through the EU Research Framework Programme?

HE

Reference Number

101112800/SS73020001

Is the Job related to staff position within a Research Infrastructure?

No

Offer Description

    

    Job: Research Software Engineer

    Reference: BIOPOLIS 2024-20

    Main research field: Bioinformatics

                                               

We are seeking to recruit an enthusiastic and diligent Research Software Engineer

to join the Bioinformatics Unit (BU) at BIOPOLIS/CIBIO. The successful candidate

will play a crucial role in developing software for the unit and support multiple

ongoing European projects, such as eDNAqua-plan, and DNAquaIMG.

 

What you'll do:

 

• Design and implement robust, scalable data analysis workflows using Python,

R, and Shell/Bash scripting.

•Collaborate effectively with researchers to translate complex scientific

questions into elegant software solutions, ensuring impactful results for

projects like eDNAqua-plan and DNAquaIMG.

•Contribute to the development and maintenance of our bioinformatics

software infrastructure, leveraging cutting-edge tools like Git and CI/CD

pipelines to ensure smooth and efficient software development processes.

-Help define (meta)data best practices and guidelines for our aquatic

biodiversity workflows.

•Collaborate closely with researchers and team members to ensure project

success.

• Demonstrate exceptional problem-solving skills and a continuous learning

mindset.

Required Skills and Experience: 

• A Master's degree (MSc) in Computer Science, Informatics, Computational

Biology, Bioinformatics, or a similar field.

• Strong programming proficiency in R and Python, with experience using R

notebooks and Jupyter Notebooks.

• Proven experience in designing, developing, and deploying software in R or

Python.

• In-depth expertise in Linux operating systems and scripting languages

(Shell/Bash).

• A solid understanding of software development methodologies (e.g., Agile)

and tools (e.g., Git, CI/CD).

• Excellent communication and collaboration skills.

• The ability to work independently and manage time effectively in a dynamic

environment.

• Strong written and verbal communication skills in English.

In addition:

• 1-2 years of experience in a similar role.

• Experience with containerization tools like Docker and environment

management tools like Conda.

• Experience with relational databases like MySQL and PostgreSQL.

• Experience with web development frameworks like Django.

• Relevant certifications or training in data management, data governance,

bioinformatics, or related fields.

 

Important Note:

• Authorization to work in Portugal is required.

We offer a competitive compensation package and a stimulating work environment

that encourages innovation and professional growth.

To apply, please submit your CV, motivation letter, and any relevant certifications.

Working plan: The successful candidate will play a crucial role in multiple tasks within the scope of the projects, namely:    

Contributing to the development of (meta)data best practices and guidelines for aquatic biodiversity workflows.

Analyzing and interpreting large datasets, particularly those generated from high-throughput sequencing (HTS) technologies.

Developing and implementing bioinformatics pipelines using programming languages like R, Python, and Shell/Bash.

Contributing to the development and maintenance of bioinformatics infrastructure using tools like git and CI/CD pipelines.

Collaborate effectively with researchers and team members to define project goals and deliver results.

Thrive and deliver results on goals in a fast-paced, dynamic and highly multi-tasking environment.

Demonstrate strong problem-solving skills and a willingness to learn new technologies and adapt to new challenges.

 

Selection Process:

All applications will be screened based on the qualifications outlined above.

Candidates who meet the minimum requirements will be further evaluated based on:

• Professional experience (50%)

• The relevance of academic degree(s) and/or other professional training(s) (20%)

• Motivation letter (30%)

Based on the curricular evaluation, a shortlist of the top candidates will be created.

Shortlisted candidates will be invited for an interview focusing on their motivation for

the role and potentially including a technical discussion or questions. The final rank

will be calculated by the weighted average of the interview (40%) and the original

ranked mark (60%). The interview will focus on the motivation of the candidate and

his/her knowledge of the subject of this call. It may also include a technical

discussion and/or technical questions. The jury will not choose any of the candidates

if they fail to demonstrate that they are a good fit for the position.

Applicable legislation: Portuguese Labour Code, approved by Law 7/2009 of February 12, in its current form.

Workplace: The work will be carried out at the CIBIO-InBIO/BIOPOLIS, in Vairão, Vila do Conde.

 The contract is expected to start on 01/05/2024.

 Monthly remuneration: Level 20 of the Single Salary Table (TRU), approved by Order no. 1553-C/2008 of December 31st, i.e. 1596,51 €.

 

 Jury composition: The Jury will be chaired by Dr. Nuno Fonseca (CIBIO), having as effective members Dr. António Muñoz (CIBIO) and Dr. Filipa Martins (CIBIO).

 Publicity and communication of results: All candidates will be informed by email about the result of their application.

 

Application: The call for applications is open between 03/04/2024 to 14/04/2024 (24:00 GMT).  The applications are formalized at the electronic address https://cibio.up.pt/en/jobs/

 with following documents in a digital form, in PDF format: curriculum vitae, certificate of qualifications and other relevant documents. Admitted and excluded candidates will be notified by e-mail with receipt of delivery of the notification.

 

After notification, the candidates have 10 working days to comment.

The present competition is exclusively aimed at filling the indicated vacancy and may be terminated until the homologation of the final ranking list of candidates, and expires with the respective occupation of the job position on offer. The Jury reserves the right not to choose any candidate and to terminate the job offer if no candidates sufficiently demonstrate the required competencies and qualifications outlined in the job description.

Non-discrimination and equal access policy: The BIOPOLIS Association actively promotes a policy of non-discrimination and equal access, whereby no candidate may be privileged, benefited, disadvantaged or deprived of any right or exempted from any duty on the grounds of ancestry, age, gender, sexual orientation, marital status, family situation, economic situation, education, origin or social condition, genetic heritage, reduced work capacity, disability, chronic illness, nationality, ethnic origin or race, territory of origin, language, religion, political or ideological beliefs and trade union membership.

 

 

 

Requirements

Research Field

Computer science

Education Level

Master Degree or equivalent

Additional Information
Work Location(s)

Number of offers available

1

Company/Institute

ASSOCIAÇÃO BIOPOLIS

Country

Portugal

State/Province

rua Padre Armando Quintas N.º 7

City

Vairão

Postal Code

4485-661

Street

Vairão - Vila do conde

Where to apply

Website

https://cibio.up.pt/en/jobs/

Contact

State/Province

VILA DO CONDE

City

Vairão

Website

https://www.biopolis.pt/en/

Street

Vairão - Vila do conde

Postal Code

4485-661

E-Mail

[email protected]

Phone

252660411

STATUS: EXPIRED